Publications & Presentations

Publications

Co-first author paper in preparation.

Manuscript in preparation. Date will be revised upon publication.

Citation: Diya Das*, Levi Gadye*, Michael Sanchez*, Kelly N. Street, Davide Risso, Ariane Baudhuin, Michael B. Cole, Allon Wagner, Yoon Gi Choi, Elizabeth Purdom, Sandrine Dudoit, Nir Yosef, John Ngai, and Russell B. Fletcher. Manuscript in preparation.


Deconstructing Olfactory Stem Cell Trajectories at Single Cell Resolution (in press)

Published in Cell Stem Cell, 2017

Paper in press. Date will be revised upon publication.

Citation: Russell B. Fletcher*, Diya Das*, Levi Gadye, Kelly N. Street, Ariane Baudhuin, Allon Wagner, Michael B. Cole, Quetzal Flores, Yoon Gi Choi, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit, Davide Risso and John Ngai. Deconstructing Olfactory Stem Cell Trajectories at Single Cell Resolution. Cell Stem Cell, in press.



Presentations

Data Visualization in R

March 14, 2017

Tutorial, UC Berkeley - The Hacker Within (Berkeley Institute for Data Science), Berkeley, California

Following my presentation with David DeTomaso on data transformation in R & Python, I gave a presentation on the basics of visualization in R, to be followed by a parallel presentation in Python by David on April 18. The relevant Jupyter Notebooks are located in github.com/diyadas/tutorials.

Data Tidying and Transformation in R & Python

March 14, 2017

Tutorial, UC Berkeley - The Hacker Within (Berkeley Institute for Data Science), Berkeley, California

Together with David DeTomaso and Andrey Indukaev, I planned a presentation on the basics of data tidying and transformation, performing the same operations in parallel for R & Python, demonstrating the versatility of both languages for data analysis. I presented the R sections while David presented the Python sections. The Jupyter Notebooks we used are located in github.com/diyadas/tutorials.

Deconstructing Olfactory Stem Cell Trajectories at Single Cell Resolution

January 09, 2017

Talk, UC Berkeley Developmental & Regenerative Biology Retreat, Berkeley, CA

I presented several highlights from our single-cell analyses of the trajectories arising from the olfactory stem cell during steady-state differentiation.

Introduction to R & RStudio

November 29, 2016

Tutorial, UC Berkeley - The Hacker Within (Berkeley Institute for Data Science), Berkeley, California

This introduction to R & RStudio was presented in collaboration with Micha Kahlen.

Deconstructing Olfactory Stem Cell Trajectories at Single Cell Resolution

November 19, 2016

Poster, UC Berkeley Computational Biology Retreat, Marshall, California

Authors: Diya Das1, Russell B. Fletcher1, Levi Gadye6, Kelly N. Street5,8, Ariane Baudhuin1, Allon Wagner2,8, Michael B. Cole3,8, Quetzal Flores1, Yoon Gi Choi7, Nir Yosef2,8, Elizabeth Purdom4,8, Sandrine Dudoit4,5,8, Davide Risso5 and John Ngai1,6,7

Making a To-Do List That Works for You

October 21, 2016

Tutorial, Becoming More Productive: Workflow Strategies for Graduate Students, Berkeley, California

This presentation was part of a workshop hosted by the UC Berkeley Library for students in the life & health sciences.

Defining Lineage Trajectories and Cell Fate Transitions During Tissue Regeneration Using Single-Cell RNA Sequencing

April 24, 2016

Poster, Berkeley Stem Cell Center Retreat, Asilomar, California

Authors: Diya Das, Levi Gadye, Michael Sanchez, Kelly N. Street, Davide Risso, Ariane Baudhuin, Michael B. Cole, Allon Wagner, Justin Choi, Elizabeth Purdom, Sandrine Dudoit, Nir Yosef, John Ngai, and Russell B. Fletcher.