Kelly Street, Davide Risso, Russell B. Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, and Sandrine Dudoit. (2018). Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics. BMC Genomics 19, 477.
Stable and accurate inference of branching trajectories is an important problem in single-cell genomics. We provide a quantitative comparison of existing methods and introduce a more modular novel method, Slingshot. Read more